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What’s new with FlowJo?

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We’ve designed FlowJo™ Software version 10.9 to help you take your experiments further with more tools and updated technology!

  •  Now, with ClusterExplorer built-in to the workspace tab, you can visualize your clustering results on any dimensionality-reduced set of parameters.
  • With Embed, you can forward propagate your clustering or dimensionality reduction results to new files with the same parameters. 
  • The new MEM tool (Marker Enrichment Model) allows you to conveniently simplify and rename a set of clusters, to get a quantitative, automated idea of your data population.
  • New autofluorescence subtraction without AutoSpill allows you to choose “true zero” and use an unstained cell data file to model autofluorescence for subtraction. 
  • Spectral similarity scores enable you to calculate the cosine index for your actual data to evaluate reagent choices you made in panel design. 

We hope you have fun exploring these new features which are available to you today when you download the latest version of FlowJo™ Software v10.9.

Features and Benefits

FlowJo™ Software is the leading platform for single-cell flow cytometry analysis that helps you interpret your data quickly and effectively with accessible features for immunophenotyping, cell cycle analysis, proliferation, kinetics studies, quantitative population comparison, high-dimensional analysis and more.



COMPATIBILITY. Single solution for flow analysis. Compatible with all data files from all acquisition software packages and cytometers.

EASY TO USE! Intuitive drag-and-drop analysis and publication-quality graphics.

ADVANCE DATA ANALYSIS. Models for advanced data analysis. Algorithmic analysis and fast calculation speeds.

SAVE TIME! Plugin architecture with fast updates with novel algorithms. Visualization tools to minimize time to insight.

BD TOTAL SOLUTION. End-to-end experiment capabilities and 45+ years of experience in flow cytometry analysis.

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Take your research wherever you go with an instrument-agnostic platform that accepts all FCS file types.

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FlowJo meets FlowJo Portal

Introducing a new way to manage your FlowJo licenses! With FlowJo Portal, enjoy the flexibility to sign in to FlowJo wherever you choose.

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Innovative plugins and tools to upgrade your FlowJo analysis.

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